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  • zh

adf:fukui2020

Conceptual DFT计算福井函数(FuKui函数)、简缩福井函数(Condensed FuKui Function)

关键词:FuKui Function,Condensed Fukui Function, Local Fukui Function,Conceptual DFT

参数设置

基本的参数设置,可以参考:ADF参数设置详解,这里作为范例,以CO为例子,选择如下参数:

Properties > FuKui Functions勾选亲电、亲核两种进攻的FuKui函数:

同时打开AIM分析,需要设置为Full级别:

保存任务

保存任务的时候,例如命名为 COFuKui,则会生成三个任务,分别是用户研究的这个体系(本例中是水),以及增加、减少1个电子的体系,如下图所示:

运行其中的主任务COFuKui,则会自动先后运行增减电子的体系,最后运行COFuKui这个任务,并生成FuKui函数信息。

如果提交到没有图形界面的Linux服务器

在 COFuKui.run中,有关于两个衍生任务的依赖性:

# dependency: "D:/ADF_DATA/COFuKui.minus" "COFuKui.minus.results/adf.rkf" adf.minus.rkf
# dependency: "D:/ADF_DATA/COFuKui.plus" "COFuKui.plus.results/adf.rkf" adf.plus.rkf

如果任务是提交到Linux服务器的,用户可以自行修改文件中所有的路径。 因此应该先运行这两个衍生的任务,然后运行COFiKui.run。

最后一行:

"$AMSBIN/amsreport" "${AMS_RESULTSDIR-${AMS_JOBNAME-ams}.results}/adf.rkf" fukui-minus-plus-bader

这里将

${AMS_RESULTSDIR-${AMS_JOBNAME-ams}.results}

替换为主任务的*.results/的完整路径,例如/home/amsters/task/COFuKui.results

结果查看

数值结果

主任务COFuKui:

SCM > Output > Properties > Conceptual DFT(FDL) ,可以看到:

1,全局指数:

 GLOBAL DESCRIPTORS
 ==================

 Electronic chemical potential  mu+ =   -0.000
 Electronic chemical potential  mu- =   -0.540
 Electronic chemical potential  mu  =   -0.270
 Electronegativity (chi=-mu)        =    0.270
 Hardness (eta)                     =    0.540
 Softness (S)                       =    1.852
 Electrophilicity index (w=omega)   =    0.068
 Dissociation energy (nucleofuge)   =    1.837 (eV)
 Dissociation energy (electrofuge)  =   16.531 (eV)
 Electrodonating power (w-)         =    0.304
 Electroaccepting power (w+)        =    0.034
 Net electrophilicity               =    0.338

即:

  • plus体系的化学势(plus体系与当前体系的能量差)
  • minus体系的化学势(minus体系与当前体系的能量差)
  • 当前性体系的化学势
  • Mulliken电负性
  • 电子的硬度
  • 电子的软度
  • 亲电指数
  • 等等

ADF计算这些量的含义与用途参考文献:

  • G. Hoffmann, V. Tognetti and L. Joubert, J. Mol. Model. 24, 281 (2018)

后面分别基于Hirshfeld、Mulliken、Voronoi、QTAIM分割电荷方法而产生的分析结果。

2,基于Hirshfeld:

 Hirshfeld Partitioning 


 MAIN ATOMIC DESCRIPTORS: CANONICAL ENSEMBLE
 ===========================================

 Atom		   f+		   f-		   f0		   f(2)
 C(1)		   0.664		   0.621		   0.643		   0.043
 O(2)		   0.336		   0.379		   0.357		  -0.043
 --------------------------------------------------------------------------------
 Total		   1.000		   1.000		   1.000		   0.000


 MAIN ATOMIC DESCRIPTORS: GRAND CANONICAL ENSEMBLE
 =================================================

 Atom		   S*f+		   S*f-		   S*f0		   s(2)
 C(1)		   1.230		   1.150		   1.190		   0.147
 O(2)		   0.622		   0.702		   0.662		  -0.147
 --------------------------------------------------------------------------------
 Total		   1.852		   1.852		   1.852		   0.000

 Please note that s(2)=S^2*f(2) (approximation)


 COMPOSITE FUKUI FUNCTIONS
 =========================

 Atom		   mu+*f+		   mu-*f-		   w*f+
 C(1)		  -0.000		  -0.335		   0.045		
 O(2)		  -0.000		  -0.205		   0.023		
 --------------------------------------------------------------
 Total		  -0.000		  -0.540		   0.068


 COMPOSITE DUAL DESCRIPTORS
 ==========================

 Atom		   w*f(2)		   S*f(2)		   S^2*f(2)

 C(1)		   0.003		   0.080		   0.147		
 O(2)		  -0.003		  -0.080		  -0.147		
 --------------------------------------------------------------
 Total		   0.000		   0.000		   0.000


 CONDENSED LOCAL ELECTROPHILICITY AND NUCLEOPHILICITY
 ====================================================

 Atom		   electro		  nucleo

 C(1)		   0.337		  -0.305		
 O(2)		   0.163		  -0.195		
 --------------------------------------------
 Total		   0.500		  -0.500

包括每个原子的正则系综主要原子描述符、巨正则系综主要原子描述符、复合FuKui函数、复合双描述符、简缩局部亲电与亲核指数。

3,基于Mulliken电荷分割方法的结果:

Mulliken Partitioning 


 MAIN ATOMIC DESCRIPTORS: CANONICAL ENSEMBLE
 ===========================================

 Atom		   f+		   f-		   f0		   f(2)
 C(1)		   0.727		   0.674		   0.701		   0.053
 O(2)		   0.273		   0.326		   0.299		  -0.053
 --------------------------------------------------------------------------------
 Total		   1.000		   1.000		   1.000		   0.000


 MAIN ATOMIC DESCRIPTORS: GRAND CANONICAL ENSEMBLE
 =================================================

 Atom		   S*f+		   S*f-		   S*f0		   s(2)
 C(1)		   1.346		   1.248		   1.297		   0.182
 O(2)		   0.506		   0.604		   0.555		  -0.182
 --------------------------------------------------------------------------------
 Total		   1.852		   1.852		   1.852		   0.000

 Please note that s(2)=S^2*f(2) (approximation)


 COMPOSITE FUKUI FUNCTIONS
 =========================

 Atom		   mu+*f+		   mu-*f-		   w*f+
 C(1)		  -0.000		  -0.364		   0.049		
 O(2)		  -0.000		  -0.176		   0.018		
 --------------------------------------------------------------
 Total		  -0.000		  -0.540		   0.068


 COMPOSITE DUAL DESCRIPTORS
 ==========================

 Atom		   w*f(2)		   S*f(2)		   S^2*f(2)

 C(1)		   0.004		   0.098		   0.182		
 O(2)		  -0.004		  -0.098		  -0.182		
 --------------------------------------------------------------
 Total		   0.000		   0.000		   0.000


 CONDENSED LOCAL ELECTROPHILICITY AND NUCLEOPHILICITY
 ====================================================

 Atom		   electro		  nucleo

 C(1)		   0.370		  -0.330		
 O(2)		   0.130		  -0.170		
 --------------------------------------------
 Total		   0.500		  -0.500

4,基于Voronoi的电荷分割方法的结果

 Vorono? Partitioning 


 MAIN ATOMIC DESCRIPTORS: CANONICAL ENSEMBLE
 ===========================================

 Atom		   f+		   f-		   f0		   f(2)
 C(1)		   0.662		   0.598		   0.630		   0.064
 O(2)		   0.338		   0.402		   0.370		  -0.064
 --------------------------------------------------------------------------------
 Total		   1.000		   1.000		   1.000		  -0.000


 MAIN ATOMIC DESCRIPTORS: GRAND CANONICAL ENSEMBLE
 =================================================

 Atom		   S*f+		   S*f-		   S*f0		   s(2)
 C(1)		   1.226		   1.107		   1.167		   0.219
 O(2)		   0.626		   0.744		   0.685		  -0.219
 --------------------------------------------------------------------------------
 Total		   1.852		   1.852		   1.852		  -0.000

 Please note that s(2)=S^2*f(2) (approximation)


 COMPOSITE FUKUI FUNCTIONS
 =========================

 Atom		   mu+*f+		   mu-*f-		   w*f+
 C(1)		  -0.000		  -0.323		   0.045		
 O(2)		  -0.000		  -0.217		   0.023		
 --------------------------------------------------------------
 Total		  -0.000		  -0.540		   0.068


 COMPOSITE DUAL DESCRIPTORS
 ==========================

 Atom		   w*f(2)		   S*f(2)		   S^2*f(2)

 C(1)		   0.004		   0.119		   0.219		
 O(2)		  -0.004		  -0.119		  -0.219		
 --------------------------------------------------------------
 Total		  -0.000		  -0.000		  -0.000


 CONDENSED LOCAL ELECTROPHILICITY AND NUCLEOPHILICITY
 ====================================================

 Atom		   electro		  nucleo

 C(1)		   0.339		  -0.291		
 O(2)		   0.161		  -0.209		
 --------------------------------------------
 Total		   0.500		  -0.500

5,基于QTAIM分割方法的结果

 QTAIM Partitioning 


 MAIN ATOMIC DESCRIPTORS: CANONICAL ENSEMBLE
 ===========================================

 Atom		   f+		   f-		   f0		   f(2)
 C(1)		   0.668		   0.504		   0.586		   0.164
 O(2)		   0.332		   0.496		   0.414		  -0.164
 --------------------------------------------------------------------------------
 Total		   1.000		   1.000		   1.000		   0.000


 MAIN ATOMIC DESCRIPTORS: GRAND CANONICAL ENSEMBLE
 =================================================

 Atom		   S*f+		   S*f-		   S*f0		   s(2)
 C(1)		   1.237		   0.933		   1.085		   0.562
 O(2)		   0.615		   0.919		   0.767		  -0.562
 --------------------------------------------------------------------------------
 Total		   1.852		   1.852		   1.852		   0.000

 Please note that s(2)=S^2*f(2) (approximation)


 COMPOSITE FUKUI FUNCTIONS
 =========================

 Atom		   mu+*f+		   mu-*f-		   w*f+
 C(1)		  -0.000		  -0.272		   0.045		
 O(2)		  -0.000		  -0.268		   0.022		
 --------------------------------------------------------------
 Total		  -0.000		  -0.540		   0.068


 COMPOSITE DUAL DESCRIPTORS
 ==========================

 Atom		   w*f(2)		   S*f(2)		   S^2*f(2)

 C(1)		   0.011		   0.304		   0.562		
 O(2)		  -0.011		  -0.304		  -0.562		
 --------------------------------------------------------------
 Total		   0.000		   0.000		   0.000


 CONDENSED LOCAL ELECTROPHILICITY AND NUCLEOPHILICITY
 ====================================================

 Atom		   electro		  nucleo

 C(1)		   0.355		  -0.232		
 O(2)		   0.146		  -0.269		
 --------------------------------------------
 Total		   0.500		  -0.500

可视化

SCM → View → Add → Isosurface: With Phase → Select Field → Properties → Fukui Plus 提示选择Plus任务生成*.rkf文件,即COFuKui.results/adf.plus.rkf,即显示:

类似显示Fukui Minus。

SCM → View → Add → Isosurface: With Phase → Select Field → Properties → Dual Descriptor(FDL)或Dual Descriptor(FMO)

adf/fukui2020.txt · 最后更改: 2023/09/10 23:12 由 liu.jun

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